BigHugger
sk Skill · K-Dense-AI

oligonucleotides

Design small interfering RNA and antisense oligonucleotide sequences against a transcript, and screen them for the failure modes specific to nucleic-acid drugs. Use this skill to tile a target transcript, apply positional and thermodynamic selection rules including duplex asymmetry and nearest-neighbour melting temperature, scan candidates for seed-region complementarity to off-target transcripts, and lay out a…

installs 8w
0
30-day movement
starts with the next reading
Related entries
1
Connections
1
bashPython
Host repository
K-Dense-AI/drug-discovery-agent-skills
Version
1.0
Allowed tools
Read Write Edit Bash
Compatible with
Requires Python 3.10+ only. Sequence tiling, nearest-neighbour thermodynamics, and seed-match scanning are implemented in the standard library, no reference sequence is bundled.
Licence
MIT
Host stars
30
Host language
Python