sk Skill · tassiovale
pydeseq2
Differential gene expression analysis for bulk RNA-seq with PyDESeq2, including formulaic designs, Wald tests, FDR correction, LFC shrinkage, and result visualization.
Open on skills.sh ↗read 2026-09-17
- installs 8w
- 0
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- Related entries
- 3
- Connections
- 1
pythonbashPython
- Host repository
- tassiovale/claude-code-kit
- Version
- 1.1
- Allowed tools
- Read Write Edit Bash
- Compatible with
- Requires Python >=3.11 and PyDESeq2 0.5.4-compatible dependencies. Examples target PyDESeq2 0.5.x, formulaic design strings, explicit contrasts, and uv-based installs.
- Licence
- MIT license
- Host stars
- 13
- Host language
- Python