BigHugger
sk Skill · K-Dense-AI

depmap

Query the Cancer Dependency Map (DepMap) for cancer cell line gene dependency scores (CRISPR Chronos), RNAi DEMETER2 scores, PRISM compound sensitivity, and gene effect profiles across the cell-line panel. Use for identifying cancer-selective vulnerabilities, separating pan-essential genes from selective ones, finding synthetic lethal interactions, correlating dependency with mutation, expression and copy number,…

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Related entries
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Connections
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pythonPython
Host repository
K-Dense-AI/drug-discovery-agent-skills
Version
1.1
Allowed tools
Read Write Edit Bash
Compatible with
Requires Python 3.10+ with pandas, numpy, so there is no usable REST API. Data is CC-BY-4.0 and requires registration to download.
Licence
MIT
Host stars
30
Host language
Python