sk Skill · K-Dense-AI
protein-binder-design
Design new proteins that bind a chosen surface, using BindCraft's AlphaFold2-guided hallucination or the RFdiffusion backbone plus ProteinMPNN sequence pipeline. Use this skill to specify a target epitope by hotspot residue, trim a receptor to the region worth designing against, set up a design campaign, and filter the output on the in-silico metrics that predict experimental success — interface predicted TM-score,…
Open on skills.sh ↗read 2026-09-17
- installs 8w
- 0
- 30-day movement
- starts with the next reading
- Related entries
- 1
- Connections
- 1
bashPython
- Host repository
- K-Dense-AI/drug-discovery-agent-skills
- Version
- 1.0
- Allowed tools
- Read Write Edit Bash
- Compatible with
- from GitHub) with AlphaFold2 weights, or RFdiffusion plus ProteinMPNN, and an NVIDIA GPU — a single binder trajectory is tens of minutes.
- Licence
- MIT
- Host stars
- 30
- Host language
- Python