gget
gget CLI and Python workflow for quick genomic database queries, sequence lookup, BLAST-style searches, enrichment checks, and reproducible bioinformatics evidence logs. Use when a task needs quick bioinformatics lookup across genomic reference databases with the gget CLI or Python package.
- installs 8w
- 1,692
- 30-day movement
- starts with the next reading
- Related entries
- 6
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This skill teaches an AI coding agent how to use the gget CLI and Python package for quick genomic database queries: gene metadata, sequence lookup, BLAST-style searches, and enrichment checks. It covers when to use gget, installation, common modules, quick examples, and a reproducibility log pattern for scientific outputs.
It gives the agent a ready-made workflow for bioinformatics lookups without building a full local pipeline.
Use it to
- Find Ensembl IDs and gene metadata
- Fetch transcript or gene sequences
- Run quick BLAST or BLAT lookups
- Check enrichment for gene sets
- Log query metadata for reproducibility
For Developers and scientists doing genomic lookups via agents
- Host repository
- affaan-m/ECC
- Installs, lifetime
- 3,000
- Installs, 8 weeks
- 1,692
- Host stars
- 261k
- Host language
- JavaScript