sk Skill · dralkh
cellxgene-census
Query the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial Census data, or reference atlas comparisons across organisms, tissues, diseases, assays, and cell types. For analyzing your own local single-cell data use…
Open on skills.sh ↗read 2026-09-16
- installs 8w
- 0
- 30-day movement
- starts with the next reading
- Related entries
- 3
- Connections
- 1
pythonbashTypeScript
- Host repository
- dralkh/iktinah
- Version
- 1.1
- Allowed tools
- Read Write Edit Bash
- Compatible with
- Requires Python >=3.10, <3.13. Examples target cellxgene-census 1.17.x and the 2025-11-08 stable LTS Census, spatial workflows need the spatial extra and TileDB-SOMA >=1.15.5. No authentication is required for public Census data.
- Licence
- MIT
- Host stars
- 78
- Host language
- TypeScript