sk Skill · dralkh
pydeseq2
Differential gene expression analysis for bulk RNA-seq with PyDESeq2, including formulaic designs, Wald tests, FDR correction, LFC shrinkage, and result visualization.
Open on skills.sh ↗read 2026-09-16
- installs 8w
- 0
- 30-day movement
- starts with the next reading
- Related entries
- 3
- Connections
- 1
pythonbashTypeScript
- Host repository
- dralkh/iktinah
- Version
- 1.1
- Allowed tools
- Read Write Edit Bash
- Compatible with
- Requires Python >=3.11 and PyDESeq2 0.5.4-compatible dependencies. Examples target PyDESeq2 0.5.x, formulaic design strings, explicit contrasts, and uv-based installs.
- Licence
- MIT license
- Host stars
- 78
- Host language
- TypeScript