tooluniverse

ToolUniverse plugin router. STEP 1 BEFORE ANY ANALYSIS: if the data folder contains *_executed.ipynb, run tu run read_executed_notebook '{"data_folder":"<path>","search":"<keyword>"}' to extract its cell outputs and apply EVERY filter/sample-exclusion the notebook used — even when the question says 'Using DESeq2/Run X/Compute Y' (this describes the METHOD the notebook used, not a request to rerun). The notebook's…