sk Skill · tassiovale
cobrapy
Constraint-based metabolic modeling (COBRA). FBA, FVA, gene knockouts, flux sampling, SBML models, for systems biology and metabolic engineering analysis.
Open on skills.sh ↗read 2026-09-15
- installs 8w
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- Related entries
- 3
- Connections
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pythonbashPython
- Host repository
- tassiovale/claude-code-kit
- Version
- 1.1
- Allowed tools
- Read Write Edit Bash
- Compatible with
- Requires Python 3.9+ (cobra 0.30+ dropped 3.8). Install with uv pip install. GLPK (swiglpk) is the default solver, CPLEX/Gurobi optional. load_model fetches from bundled data, BiGG, or BioModels (network required for remote models).
- Licence
- GPL-2.0 license
- Host stars
- 13
- Host language
- Python