sk Skill · tassiovale
gget
Fast CLI/Python queries to 20+ bioinformatics databases. Use for quick lookups: gene info, BLAST/BLAT, viral sequence downloads, AlphaFold structures, enrichment analysis, OpenTargets, COSMIC, CELLxGENE, and 8cube mouse specificity/expression data. Best for interactive exploration and simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.
Open on skills.sh ↗read 2026-09-17
- installs 8w
- 0
- 30-day movement
- starts with the next reading
- Related entries
- 6
- Connections
- 4
pythonbashPython
- Host repository
- tassiovale/claude-code-kit
- Version
- 1.1
- Allowed tools
- Read, Write, Edit, Bash
- Compatible with
- use Python 3.9 or 3.10 if `gget setup cellxgene` or `gget setup alphafold` fails.
- Licence
- BSD-2-Clause license
- Host stars
- 13
- Host language
- Python